National Institute of Plant Genome Research
Digital India     
 

ONLINE TOOLS AND RESOURCES DEVELOPED BY NIPGR

S. No. Database Name Description PMID Group Leader
32. PtRFdb A database for plant transfer RNA-derived fragments. 29939244 Dr.Shailesh Kumar
31. KIXBASE KIXBASE comprises the largest online collection of KIX sequences, enabling assessments at the level of both sequence and structure, incorporating PSIPRED and MUSTER at the backend for further annotation and quality assessment. 29097748 Dr. Jitendra K Thakur
30. CicerTransDB CicerTransDB provide a centralized putatively complete list of Transcription factors (TFs) in a food legume, chickpea. It is based on chickpea (Cicer arietinum L.) annotation v 1.0. The database is an outcome of genome-wide domain study and manual classification of TF families. 27472917 Dr. Niranjan Chakraborty
29. CMsDB-Chickpea Chickpea Microsatellite Database 26347762 Dr. Mukesh Jain
28. Chickpea Genome Analysis Project (CGAP) [Advanced Draft Genome (CGAP-2)] Chickpea Genome Analysis Project web portal having information of Whole genome assembly and annotation of Chickpea genomes sequenced at NIPGR. 26259924 Prof. Akhilesh K. Tyagi, Dr. Sabhyata Bhatia, Dr. Debasis Chattopadhyay, Dr. Gitanjali Yadav, Dr. Mukesh Jain
27. Wild Chickpea Genome Analysis Project (WCGAP) Web-portal for Wild Chickpea Genome Analysis Project (WCGAP). This portal harbours the information related to Whole genome assembly and annotation of Wild type Chickpea genomes sequenced at NIPGR. 27567261 Dr. Debasis Chattopadhyay
26. Next Generation Challenge Program on Chickpea Genomics (NGCPCG) Web-portal for Next Generation Challenge Program on Chickpea Genomics (NGCPCG) --  
25. CTDB An integrated chickpea transcriptome database for functional and applied genomics. 26322998 Dr. Mukesh Jain
24. FmTEMDb Foxtail millet Transposable Element-based Marker Database is a repository of complete TE data along with respective marker information. 25428892 Dr. Manoj Prasad
23. FmTFDb A foxtail millet transcription factors database for expediting functional genomics in millets 25005261 Dr. Manoj Prasad
22. FmMiRNADb Database providing the generated miRNA marker information to the global scientific community including access of the miRNA information such as their chromosomal location, length, MFE, AMFE, sequences of pre-miRNA and mature miRNA, secondary structure and target gene information. -- Dr. Manoj Prasad
21. EssOilDB A database of essential oils reflecting terpene composition and variability in the plant kingdom 25534749 Dr. Gitanjali Yadav
20. TGRD An integrated repository of useful tomato genomic information for basic and applied research. 24466070 Dr. Debasis Chattopadhyay
19. RiceSRTFDB A database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis 23660286 Dr. Mukesh Jain
18. FmMDb A versatile database of foxtail millet markers for millets and bioenergy grasses research. 23951158 Dr. Manoj Prasad
17. Terzyme A tool for identification and analysis of the plant terpenome. 29339971 Dr. Gitanjali Yadav
16. VIGS tool A versatile tool for unraveling the functional relevance of multiple abiotic-stress-responsive genes in crop plants. 25071806 Dr. Muthappa Senthil-Kumar
15. NGS QC Toolkit A toolkit for quality control of next generation sequencing data. 22312429 Dr. Mukesh Jain
14. MaCgene Browser Browser for Mapping and Clustering Genes -- Dr. Gitanjali Yadav
13. Chickpea Browser A genome Browser for Chickpea -- Prof. Akhilesh K. Tyagi
12. NEXCADE Perturbation analysis for complex networks 22870252 Dr. Gitanjali Yadav
11. PlecDom A program for identification and analysis of plant lectin domains. 19474338 Dr. Gitanjali Yadav
10. Chickpea Genomic Web Resource (CGWR) Visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes. 25518738 Dr. Gitanjali Yadav
8. RiceSRTFDB A database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis. 23660286 Dr. Mukesh Jain
7. PlantRGS A Web Server for the Identification of Most Suitable Candidate Reference Genes for Quantitative Gene Expression Studies in Plants 21987088 Dr. Mukesh Jain
6. Rice SNP Discovery SNP data among rice accessions with contrasting response to abiotic stresses -- Dr. Mukesh Jain
5. Catharanthus Transcriptome Transcriptome sequence, functional annotation, gene expression and microsatellite data -- Dr. Mukesh Jain
4. Porteresia Transcriptome Transcriptome sequence and functional annotation data -- Dr. Mukesh Jain
3. Interactive Genome Maps For Plants (IGMAP) Interactive Genome Maps For Plants (IGMAP) is a platform to visualize and assess genome wide maps of genes or gene families. 25623471 Dr. Gitanjali Yadav
2. ORF Prediction Program The program enables an automated computational analysis leading to prediction of the correct order of ORFs in a bacterial biosynthetic gene cluster. -- Dr. Gitanjali Yadav
1. RManager The program is essentially a database of available reference articles within an organization, all housed in a single server, enabling better usage of disk space and allowing users within a lab to share literature data with each other and to upload and store files conveniently in one designated area. -- Dr. Gitanjali Yadav